Encalada Lab Publications

A list of our published work can also be found at PubMed:
http://www.ncbi.nlm.nih.gov/myncbi/sandra.encalada.1/bibliography/47914298/public/?sort=date&direction=ascending

Nieto-Torres JL, Encalada SE, Hansen M.  2021. LC3B phosphorylation: autophagosome's ticket for a ride toward the cell nucleus. Autophagy, https://doi.org/10.1080/15548627.2021.1961073.

Race B, Williams K, Baune C, Striebel JF, Encalada SE, Chesebro B. 2021Deletion of Kif5c does not alter prion disease tempo or spread in mouse brain. Viruses 13(7), 1391; https://doi.org/10.3390/v13071391.

 

Nieto-Torres JL, Shanahan S-L, Chassefeyre R, Landeras-Bueno S, Encalada SE*, Hansen M*. 2021LC3 phosphorylation regulates FYCO1 binding and directional transport of autophagosomes.  Current Biology S0960-9822(21)00750-8. https://doi.org/10.1016/j.cub.2021.05.052. .

https://authors.elsevier.com/c/1dGBc3QW8RwogK

* Co-corresponding authors.

 

          bioRxiv version at:

          bioRxiv doi: 10.1101/2020.05.15.081638.

          https://biorxiv.org/cgi/content/short/2020.05.15.081638v1. 

 

Chassefeyre R, Chaiamarit T, Verhelle A, Novak SW, Andrade LR, Manor U, Encalada SE. 2020Endosomal Sorting Drives the Formation of Mutant Prion Endoggresomes. bioRxiv https://doi.org/10.1101/2020.09.27.315846. In revision.

 

Butler VJ, Salazar DA, Soriano-Castell D, Alves-Ferreira M, Dennissen FJA, Vohra M, Oses-Prieto JA, Li KH, Wang AL, Jing B, Li B, Groisman A, Gutierrez E, Mooney S, Burlingame AL, Ashrafi, K, Mandelkow E-M, Encalada SE, Kao AW.  2019Tau/MAPT disease-associated variant A152T alters tau function and toxicity via impaired retrograde axonal transport. Human Molecular Genetics. 2019 May 1;28(9):1498-1514. doi: 10.1093/hmg/ddy442. [Epub ahead of print]. PMID: 30590647. PMCID: PMC6489414 

[PubMed Link]

 

Madhivanan K, Greiner ER, Alves-Ferreira M, Soriano-Castell D, Rouzbeh N, Aguirre CA, Paulsson JF, Chapman J, Jian X, Ooi FK, Lemos C, Dillin A, Prahlad V, Kelly JW, Encalada SE. 2018Cellular Clearance of Circulating Transthyretin Decreases Cell Non-Autonomous Proteotoxicity in Caenorhabditis elegans.  Proc Natl Acad Sci U S A. Jul 30. pii: 201801117. doi: 10.1073/pnas.1801117115. [Epub ahead of print]. PMID:30061394. PMCID: PMC6099907.

[PubMed Link]

 

          Cited in EurekAlert!:             

          https://www.eurekalert.org/pub_releases/2018-08/sri-rlt080718.php

 

Neumann S, Chassefeyre R, Campbell GE, Encalada SE. 2017KymoAnalyzer: a software tool for the quantitative analysis of intracellular transport in neurons. Traffic Jan;18(1):71-88. doi: 10.1111/tra.12456. Epub 2016 Dec 11. PMCID: PMC5473519.

[PubMed Link]

Click here to download the KymoAnalyzer software!

 

Rangaraju, S., Solis G.M., Thompson R.C., Gomez-Amaro R.L., Kurian L., Encalada S.E., Niculescu III, A.B., Salomon D.R., Petrascheck M. 2015Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality. eLife Dec 1;4:e08833. doi: 10.7554/eLife.08833. PMCID: PMC4720515.  

[PubMed Link]


 

Eisele Y.S., Monteiro C., Fearns C., Encalada S.E., Wiseman R.L., Powers E.T., Kelly J.W. 2015Targeting protein aggregation for the treatment of degenerative diseases. Nat Rev Drug Discov. Nov;14(11):759-80. doi: 10.1038/nrd4593. Epub 2015 Sep 4. PMCID: PMC4628595

[PubMed Link]


 

Baranczak A., Liu Y., Connelly S., Dan D.U., W-E, Greiner E.R., Genereux J.C., Wiseman R.L., Eisele Y.S., Bradbury N.C., Dong J., Noodleman L., Sharpless K.B., Wilson I.A., Encalada S.E.*, Kelly J.W.* 2015A fluorogenic aryl fluorosulfate for intraorganellar transthyretin imaging in living cells and in Caenorhabditis elegans. J Am Chem Soc. 2015 Jun 17;137(23):7404-14. doi: 10.1021/jacs.5b03042. Epub 2015 Jun 8. PMCID: PMC4472559

*Co-corresponding Authors

[PubMed Link]
 

 

Neumann S., Campbell G.E., Szpankowski L., Goldstein L.S.B., Encalada S.E.* 2014Characterizing the composition of molecular motors on moving axonal cargo using “Cargo Mapping” analysis. J Vis Exp. Oct 30;(92):e52029. doi: 10.3791/52029. PMCID: PMC4353387.

*Corresponding Author

[PubMed Link]

      Click here to see JoVE Video!

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Encalada S.E.*, & Goldstein L.S.B.* 2014Biophysical challenges to axonal transport: motor-cargo deficiencies and neurodegeneration. Annu Rev Biophys. 141-69. doi: 10.1146/annurev-biophys-051013-022746. PMID: 24702007. PMID: 24702007.

*Co-Corresponding authors

[PubMed Link]

[PDF]

 

Otero M.G., Alloatti M., Cromberg L.E., Almenar-Queralt A., Encalada S.E., Pozo Devoto V.M., Bruno L., Goldstein L.S.B., Falzone T.L. 2014Fast axonal transport of the proteasome complex depends on membrane interaction and molecular motor function. J Cell Sci. 2014 Apr 1;127(Pt 7):1537-49. doi: 10.1242/jcs.140780. Epub 2014 Feb 12. PMID: 24522182. 

[PubMed Link]
 

 

Szpankowski L., Encalada S.E., Goldstein L.S.B. 2012Subpixel colocalization reveals amyloid precursor protein-dependent kinesin-1 and dynein association with axonal vesicles. Proc Natl Acad Sci U S A. 2012 May 29;109(22):8582-7. doi: 10.1073/pnas.1120510109. Epub 2012 May 11. PMID: 22582169. PMCID: PMC3365224. 

[PubMed Link]


          Cited in Faculty of 1000:
          Stevens, D:
http://f1000.com/prime/716397807

 

 

Encalada S.E., Szpankowski L., Xia C.H., Goldstein L.S.B. 2011Stable kinesin and dynein assemblies drive the axonal transport of mammalian prion protein vesicles. Cell Feb 18;144(4):551-65. doi: 10.1016/j.cell.2011.01.021. PMID: 21335237. PMCID: PMC3576050. 

[PubMed Link] 

[PDF]
         

          Cited in Faculty of 1000:
              Sheng Z:
http://f1000.com/prime/8671969
              Kuta A, Fisher E: http://f1000.com/prime/8671969
          Cited in Alzheimer Research Forum:
              http://www.alzforum.org/pap/annotation.asp?powID=114594#
              http://www.alzforum.org/new/detail.asp?id=2712

     Featured in:

   https://www.sciencedaily.com/releases/2011/02/110217125111.htm

 

Encalada S.E., Goldstein L.S.B. 2009Axonal Transport of the Prion Protein and Prion Neuroinvasion. The New Encyclopedia of Neuroscience (Larry Squire, ed.). 2009. Elsevier, Oxford, UK, pp. 1071-1075.

 

 

Encalada S.E., Moya K.L., Lehmann S., Zahn R. 2007. The role of the prion protein in the molecular basis for synaptic plasticity and nervous system development. J Mol Neurosci. 2008;34(1):9-15. Epub 2007 Jun 14. doi: 10.1007/s12031-007-0011-x. PMID: 18157653. 

[PubMed Link]

 

 

Encalada S.E., Willis J., Lyczak R., Bowerman B. 2005A spindle checkpoint functions during mitosis in the early Caenorhabditis elegans embryo. Mol Biol Cell.  Mar;16(3):1056-70. Epub 2004 Dec 22. (cover). doi: 10.1091/mbc.e04-08-0712. PMID: 15616189. PMCID: PMC551473. 

[PubMed Link]

 

 

Gomes J.E., Encalada S.E., Swan K.A., Shelton C.A., Carter J.C., Bowerman B. 2001The maternal gene spn-4 encodes a predicted RRM protein required for mitotic spindle orientation and cell fate patterning in early Caenorhabditis elegans embryos. Development Nov;128(21):4301-14. PMID: 11684665.

[PubMed Link]

 

 

Encalada S.E., Martin P.R., Phillips J.B., Lyczak R., Hamill D.R., Swan K.A., Bowerman B. 2000DNA replication defects delay cell division and disrupt cell polarity in early Caenorhabditis elegans embryos.  Developmental Biology Dec 15;228(2):225-38. doi: 10.1006/dbio.2000.9965. PMID: 11112326. 

[PubMed Link]

 

Fernando P., Pfrender M.E., Encalada S.E., Lande R. 2000Mitochondrial DNA variation, phylogeography and population structure of the Asian elephant. Heredity (Edinb). Mar;84 ( Pt 3):362-72. doi: 10.1046/j.1365-2540.2000.00674.x. PMID: 10762406. 

[PubMed Link]

 

Encalada S.E., Zurita J.C., Bowen B.W. 1999Genetic consequences of coastal development:  the sea turtle rookeries at X’cacel Mexico. Marine Turtle Newsletter 83:8-10.

[Link]

 

Bolten A.B., Bjorndal K.A., Martins H.R., Dellinger T., Biscoito M.J., Encalada S.E., Bowen B.W. 1998Transatlantic developmental migrations of loggerhead sea turtles demonstrated by mtDNA sequence analysis.  Ecological Applications 8:1-7.

[Link]

 

Encalada S.E., Bjorndal K.A., Bolten A.B., Zurita J.C., Schroeder B., Possardt, E., Sears C.J., Bowen B.W. 1998. Population structure of loggerhead turtle (Caretta caretta) nesting colonies in the Atlantic and Mediterranean as inferred from mitochondrial DNA control region sequences. Marine Biology 1130:567-575.

[Link]

 

Lahanas P.N., Bjorndal K.A,. Bolten A.B., Encalada S.E., Miyamoto M.M., Valverde R.A., Bowen B.W. 1998Genetic composition of a green turtle (Chelonia mydas) feeding ground population:  evidence for multiple origins.  Marine Biology 130:345-352.

[Link]

 

Rankin-Baransky K., Williams C.J., Bowen B.W., Encalada S.E., Spotila J.R. 1998Origin of loggerhead sea turtles in the western north Atlantic as determined by mtDNA analysis. In: Proceedings of the Seventeenth Annual Sea Turtle Symposium. (Epperly, S. P., and Braun, J. Compilers), U.S. Dep.  Commer.  NOAA Tech Memo. 1998 NMFS-SEFSC-415. 294 pp.; 1998, p. 79. doi: 10.2307/1565903

 

 

Encalada S.E, Lahanas P.N., Bjorndal K.A., Bolten A.B., Miyamoto M.M., Bowen B.W. 1996Phylogeography and population structure of the green turtle (Chelonia mydas) in the Atlantic Ocean and Mediterranean Sea:  a mitochondrial DNA control region assessment.  Molecular Ecology Aug;5(4):473-83. PMID: 8794558.

[PubMed Link]

 

 

Encalada S.E. 1996Conservation genetics of Atlantic green turtles:  cases of imminent rookery extinctions.  In:  Proceedings of the First Sea Turtle Genetics Symposium (Bowen, B. W., and W. N. Witzell, eds). NOAA Technical Memorandum NMFS-SEFSC-396, pp33-40.

 

 

Abreu-Grobois F.A., Bass A.L., Dutton P.H., Encalada S.E. 1996PCR-RFLP analysis of sea turtle populations in the era of DNA sequencing:  is it still useful? In:  Proceedings of the First Sea Turtle Genetics Symposium (Bowen, B. W., and W. N. Witzell, eds).  NOAA Technical Memorandum NMFS-SEFSC-396, pp55-67.

Encalada S.E., Eckert S.A., Bowen B.W. 1994Forensic applications of mitochondrial DNA markers:  origin of a confiscated green turtle.  Marine Turtle Newsletter  66:1-3. [Link]