Encalada Lab Publications
A list of our published work can also be found at PubMed:
http://www.ncbi.nlm.nih.gov/myncbi/sandra.encalada.1/bibliography/47914298/public/?sort=date&direction=ascending
Chaiamarit T, Verhelle A, Encalada SE. 2022. Fluorescence Live Imaging Assays to Characterize Cell Surface Protein Internalization and Endosomal Sorting in Axons of Primary Mouse Hippocampal Neurons. Submitted.
Chassefeyre R, Chaiamarit T, Verhelle A, Novak SW, Andrade LR, Leitao ADG, Manor U, Encalada SE. 2021. Endosomal Sorting Drives the Formation of Mutant Prion Protein Endoggresomes. Cover article, Science Advances 7(52), 22 December 2021; DOI: 10.1126/sciadv.abg3693.
Comment on Faculty Opinions:
https://facultyopinions.com/prime/741357007
bioRxiv version at:
https://www.biorxiv.org/content/10.1101/2020.09.27.315846v1.full.pdf
Nieto-Torres JL, Encalada SE, Hansen M. 2021. LC3B phosphorylation: autophagosome's ticket for a ride toward the cell nucleus. Autophagy, https://doi.org/10.1080/15548627.2021.1961073.
Race B, Williams K, Baune C, Striebel JF, Encalada SE, Chesebro B. 2021. Deletion of Kif5c does not alter prion disease tempo or spread in mouse brain. Viruses 13(7), 1391; https://doi.org/10.3390/v13071391.
Nieto-Torres JL, Shanahan S-L, Chassefeyre R, Landeras-Bueno S, Encalada SE*, Hansen M*. 2021. LC3 phosphorylation regulates FYCO1 binding and directional transport of autophagosomes. Current Biology S0960-9822(21)00750-8. https://doi.org/10.1016/j.cub.2021.05.052. .
https://authors.elsevier.com/c/1dGBc3QW8RwogK
* Co-corresponding authors.
bioRxiv version at:
bioRxiv doi: 10.1101/2020.05.15.081638.
https://biorxiv.org/cgi/content/short/2020.05.15.081638v1.
Butler VJ, Salazar DA, Soriano-Castell D, Alves-Ferreira M, Dennissen FJA, Vohra M, Oses-Prieto JA, Li KH, Wang AL, Jing B, Li B, Groisman A, Gutierrez E, Mooney S, Burlingame AL, Ashrafi, K, Mandelkow E-M, Encalada SE, Kao AW. 2019. Tau/MAPT disease-associated variant A152T alters tau function and toxicity via impaired retrograde axonal transport. Human Molecular Genetics. 2019 May 1;28(9):1498-1514. doi: 10.1093/hmg/ddy442. [Epub ahead of print]. PMID: 30590647. PMCID: PMC6489414
Madhivanan K, Greiner ER, Alves-Ferreira M, Soriano-Castell D, Rouzbeh N, Aguirre CA, Paulsson JF, Chapman J, Jian X, Ooi FK, Lemos C, Dillin A, Prahlad V, Kelly JW, Encalada SE. 2018. Cellular Clearance of Circulating Transthyretin Decreases Cell Non-Autonomous Proteotoxicity in Caenorhabditis elegans. Proc Natl Acad Sci U S A. Jul 30. pii: 201801117. doi: 10.1073/pnas.1801117115. [Epub ahead of print]. PMID:30061394. PMCID: PMC6099907.
Cited in EurekAlert!:
https://www.eurekalert.org/pub_releases/2018-08/sri-rlt080718.php
Neumann S, Chassefeyre R, Campbell GE, Encalada SE. 2017. KymoAnalyzer: a software tool for the quantitative analysis of intracellular transport in neurons. Traffic Jan;18(1):71-88. doi: 10.1111/tra.12456. Epub 2016 Dec 11. PMCID: PMC5473519.
Click here to download the KymoAnalyzer software!
Rangaraju, S., Solis G.M., Thompson R.C., Gomez-Amaro R.L., Kurian L., Encalada S.E., Niculescu III, A.B., Salomon D.R., Petrascheck M. 2015. Suppression of transcriptional drift extends C. elegans lifespan by postponing the onset of mortality. eLife Dec 1;4:e08833. doi: 10.7554/eLife.08833. PMCID: PMC4720515.
Eisele Y.S., Monteiro C., Fearns C., Encalada S.E., Wiseman R.L., Powers E.T., Kelly J.W. 2015. Targeting protein aggregation for the treatment of degenerative diseases. Nat Rev Drug Discov. Nov;14(11):759-80. doi: 10.1038/nrd4593. Epub 2015 Sep 4. PMCID: PMC4628595
Baranczak A., Liu Y., Connelly S., Dan D.U., W-E, Greiner E.R., Genereux J.C., Wiseman R.L., Eisele Y.S., Bradbury N.C., Dong J., Noodleman L., Sharpless K.B., Wilson I.A., Encalada S.E.*, Kelly J.W.* 2015. A fluorogenic aryl fluorosulfate for intraorganellar transthyretin imaging in living cells and in Caenorhabditis elegans. J Am Chem Soc. 2015 Jun 17;137(23):7404-14. doi: 10.1021/jacs.5b03042. Epub 2015 Jun 8. PMCID: PMC4472559
*Co-corresponding Authors
Neumann S., Campbell G.E., Szpankowski L., Goldstein L.S.B., Encalada S.E.* 2014. Characterizing the composition of molecular motors on moving axonal cargo using “Cargo Mapping” analysis. J Vis Exp. Oct 30;(92):e52029. doi: 10.3791/52029. PMCID: PMC4353387.
*Corresponding Author
[PubMed Link]
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Encalada S.E.*, & Goldstein L.S.B.* 2014. Biophysical challenges to axonal transport: motor-cargo deficiencies and neurodegeneration. Annu Rev Biophys. 141-69. doi: 10.1146/annurev-biophys-051013-022746. PMID: 24702007. PMID: 24702007.
*Co-Corresponding authors
Otero M.G., Alloatti M., Cromberg L.E., Almenar-Queralt A., Encalada S.E., Pozo Devoto V.M., Bruno L., Goldstein L.S.B., Falzone T.L. 2014. Fast axonal transport of the proteasome complex depends on membrane interaction and molecular motor function. J Cell Sci. 2014 Apr 1;127(Pt 7):1537-49. doi: 10.1242/jcs.140780. Epub 2014 Feb 12. PMID: 24522182.
Szpankowski L., Encalada S.E., Goldstein L.S.B. 2012. Subpixel colocalization reveals amyloid precursor protein-dependent kinesin-1 and dynein association with axonal vesicles. Proc Natl Acad Sci U S A. 2012 May 29;109(22):8582-7. doi: 10.1073/pnas.1120510109. Epub 2012 May 11. PMID: 22582169. PMCID: PMC3365224.
Cited in Faculty of 1000:
Stevens, D: http://f1000.com/prime/716397807
Encalada S.E., Szpankowski L., Xia C.H., Goldstein L.S.B. 2011. Stable kinesin and dynein assemblies drive the axonal transport of mammalian prion protein vesicles. Cell Feb 18;144(4):551-65. doi: 10.1016/j.cell.2011.01.021. PMID: 21335237. PMCID: PMC3576050.
Cited in Faculty of 1000:
Sheng Z: http://f1000.com/prime/8671969
Kuta A, Fisher E: http://f1000.com/prime/8671969
Cited in Alzheimer Research Forum:
http://www.alzforum.org/pap/annotation.asp?powID=114594#
http://www.alzforum.org/new/detail.asp?id=2712
Featured in:
https://www.sciencedaily.com/releases/2011/02/110217125111.htm
Encalada S.E., Goldstein L.S.B. 2009. Axonal Transport of the Prion Protein and Prion Neuroinvasion. The New Encyclopedia of Neuroscience (Larry Squire, ed.). 2009. Elsevier, Oxford, UK, pp. 1071-1075.
Encalada S.E., Moya K.L., Lehmann S., Zahn R. 2007. The role of the prion protein in the molecular basis for synaptic plasticity and nervous system development. J Mol Neurosci. 2008;34(1):9-15. Epub 2007 Jun 14. doi: 10.1007/s12031-007-0011-x. PMID: 18157653.
Encalada S.E., Willis J., Lyczak R., Bowerman B. 2005. A spindle checkpoint functions during mitosis in the early Caenorhabditis elegans embryo. Mol Biol Cell. Mar;16(3):1056-70. Epub 2004 Dec 22. (cover). doi: 10.1091/mbc.e04-08-0712. PMID: 15616189. PMCID: PMC551473.
Gomes J.E., Encalada S.E., Swan K.A., Shelton C.A., Carter J.C., Bowerman B. 2001. The maternal gene spn-4 encodes a predicted RRM protein required for mitotic spindle orientation and cell fate patterning in early Caenorhabditis elegans embryos. Development Nov;128(21):4301-14. PMID: 11684665.
Encalada S.E., Martin P.R., Phillips J.B., Lyczak R., Hamill D.R., Swan K.A., Bowerman B. 2000. DNA replication defects delay cell division and disrupt cell polarity in early Caenorhabditis elegans embryos. Developmental Biology Dec 15;228(2):225-38. doi: 10.1006/dbio.2000.9965. PMID: 11112326.
Fernando P., Pfrender M.E., Encalada S.E., Lande R. 2000. Mitochondrial DNA variation, phylogeography and population structure of the Asian elephant. Heredity (Edinb). Mar;84 ( Pt 3):362-72. doi: 10.1046/j.1365-2540.2000.00674.x. PMID: 10762406.
Encalada S.E., Zurita J.C., Bowen B.W. 1999. Genetic consequences of coastal development: the sea turtle rookeries at X’cacel Mexico. Marine Turtle Newsletter 83:8-10.
Bolten A.B., Bjorndal K.A., Martins H.R., Dellinger T., Biscoito M.J., Encalada S.E., Bowen B.W. 1998. Transatlantic developmental migrations of loggerhead sea turtles demonstrated by mtDNA sequence analysis. Ecological Applications 8:1-7.
Encalada S.E., Bjorndal K.A., Bolten A.B., Zurita J.C., Schroeder B., Possardt, E., Sears C.J., Bowen B.W. 1998. Population structure of loggerhead turtle (Caretta caretta) nesting colonies in the Atlantic and Mediterranean as inferred from mitochondrial DNA control region sequences. Marine Biology 1130:567-575.
Lahanas P.N., Bjorndal K.A,. Bolten A.B., Encalada S.E., Miyamoto M.M., Valverde R.A., Bowen B.W. 1998. Genetic composition of a green turtle (Chelonia mydas) feeding ground population: evidence for multiple origins. Marine Biology 130:345-352.
Rankin-Baransky K., Williams C.J., Bowen B.W., Encalada S.E., Spotila J.R. 1998. Origin of loggerhead sea turtles in the western north Atlantic as determined by mtDNA analysis. In: Proceedings of the Seventeenth Annual Sea Turtle Symposium. (Epperly, S. P., and Braun, J. Compilers), U.S. Dep. Commer. NOAA Tech Memo. 1998 NMFS-SEFSC-415. 294 pp.; 1998, p. 79. doi: 10.2307/1565903
Encalada S.E, Lahanas P.N., Bjorndal K.A., Bolten A.B., Miyamoto M.M., Bowen B.W. 1996. Phylogeography and population structure of the green turtle (Chelonia mydas) in the Atlantic Ocean and Mediterranean Sea: a mitochondrial DNA control region assessment. Molecular Ecology Aug;5(4):473-83. PMID: 8794558.
Encalada S.E. 1996. Conservation genetics of Atlantic green turtles: cases of imminent rookery extinctions. In: Proceedings of the First Sea Turtle Genetics Symposium (Bowen, B. W., and W. N. Witzell, eds). NOAA Technical Memorandum NMFS-SEFSC-396, pp33-40.
Abreu-Grobois F.A., Bass A.L., Dutton P.H., Encalada S.E. 1996. PCR-RFLP analysis of sea turtle populations in the era of DNA sequencing: is it still useful? In: Proceedings of the First Sea Turtle Genetics Symposium (Bowen, B. W., and W. N. Witzell, eds). NOAA Technical Memorandum NMFS-SEFSC-396, pp55-67.
Encalada S.E., Eckert S.A., Bowen B.W. 1994. Forensic applications of mitochondrial DNA markers: origin of a confiscated green turtle. Marine Turtle Newsletter 66:1-3. [Link]